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Mining Metagenomes for Cas Proteins
… of California (UC), Berkeley, which is also affiliated with the Innovative Genomics Institute. The Impact The … the untapped potential waiting to be unearthed in sequencing and analyzing uncultivated microbes. Summary The … Jennifer Doudna’s lab, and he worked with co-first author David Burstein, then a postdoctoral fellow with Doudna and …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced … by DOE’s Bioenergy Research Centers, which initiated the sequencing of the switchgrass genome. DOE’s  Billion Ton … all over Texas with a shovel,” recalled study co-author David Lowry, who started as a postdoctoral fellow in the …
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Webinar: MycoCosm Tutorial
… Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our focus is on … on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … about myxomycetes (Amoebozoa), would you consider them for sequencing? A: We do have 1 Amoebozoan, > Dicyostelium …
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Natural Prodcast Episode 17: Cassandra Quave
… week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … things, because a lot of what we do at JGI in terms of the sequencing that we do is very people-disconnected, and … to understand more about plant natural products? We have sequencing facilities, DNA synthesis, metabolomics. Where do …
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Project Management Office
… of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, completing a formal …
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Natural Prodcast Episode 5: Brad Moore
… lucky to get some time to sit down and have a great chat with him.  I kind of lost count of how many times Brad used … Bill Fenical. And we connected to JGI through the Community Sequencing Program, and they worked with us to sequence two … at Monterey Bay, to be able to then do, at real time, sequencing on the underwater rover while it’s in the middle …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can … reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of … gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… 12, 2022. Faculty interested in developing proposals with JGI and Biosciences Area researchers should contact David Gilbert ([email protected]).   …
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JGI Portals
… a new login service, requiring the use of an ORCID account with two-factor authentication enabled to log in. Check our … access to information regarding genome and metagenome sequencing projects, and their associated metadata, around … over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue … technology.] BETSY PARKINSON: OK. DNA affinity purification sequencing. And so the way this essentially works is you … at the college level. So-- DAN: Yeah, for sure. And JGI is sequencing quite a few of the things that end up-- BETSY …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … Azad, Simon Roux, Lee Call, Natalia N. Ivanova, I Min Che, David Paez-Espino, Evangelos Karatzas, Novel Metagenome …
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Natural Prodcast Episode 11: Marnix Medema
… pathways. And today, we get to present our conversation with Marnix Medema , from Wageningen University in the … gene clusters. And I had heard the first rumors of people sequencing like these enormous numbers of genomes, like 20 … families across all genomes. And the acceleration of genome sequencing, especially in bacteria, has been enormous. There …
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