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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new … Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein Data Bank … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure …
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Fungal Friends or Foes in Plant Roots
… microbes found in plant roots may have unknown roles. Some plants and fungi have mutually beneficial (e.g., … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … related to disease-resistance, flowering time, nitrogen metabolism, seed weight and domestication. Six races of the … Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to darken. Called …
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A Grass Model to Help Improve Giant Miscanthus
… to adapt to extreme environments such as poor soils and drought. The reference genome for M. sinensis, and the … miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even with little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and … which are both eligible for BERSS). Available Resources All JGI products are available through BERSS. Learn more about …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been … help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … that would be produced by microorganisms — out,” said JGI user/collaborator Michelle O’Malley, a chemical and …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… in cooperation to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … similar functions across different forests. Primary metabolism, cell activity, and fungal development looked …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … signature of the organism back to commercial nursery plants in Europe, when seemingly innocuous ornamental plants … the bark of oaks and threaten the health of the tree. While drought conditions may slow the progress of SOD, the …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature … senior editor for  Nature Reviews Microbiology, with an unusual opportunity: would JGI researchers consider … Genome Watch? The column appears in six issues of the monthly magazine each year.  Until then, the column had been …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … for data once samples are in hand at JGI? A: It takes a few months to go from start to finish, i.e., QC to separation to … can also easily measure the 15N at the bulk level, if that helps at all.  6. Q:How would field applications of the …
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JGI at the AGU Fall Meeting
… Honeker, University of Arizona (lightning talk): “Effect of drought on soil microbial metabolisms driving carbon allocation and volatile organic … Data Standards and Reproducible Workflows To Advance Earth System Science” 11:18am Convention Center, Rm 238-239: …
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