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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation …
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An Integrated Dataset to Understand Ecosystem Interaction
… cycle nutrients like nitrogen and carbon, as well as improving the tree’s production as a biofuel feedstock. … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in sustainable forestry and agriculture, as well as for improving the resilience of bioenergy feedstock crops. The …
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Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity
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An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1T
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … B. hybridum are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  published … genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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