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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … targets for plant improvement. Surprisingly, about 16 to 56 percent of plant genes are poorly characterized, … experimentally derived biological roles to genes. Sarah:  How many plants did you all look at? Avinash: We started off …
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How to Target a Microbial Needle within a Community Haystack
… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … using a specific group of marine bacteria called “Vis6” that are found in North Sea algal blooms. The workflow …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … into undergraduate teaching laboratories with minimal overhead (cost of media, ITS sequencing and tissue …
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Ancient Algae Reveal Secrets of Plant Evolution
… genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of … crop varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These …
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How Filamentous Fungi Sense Food
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of DNA Elements (ENCODE) project, which is aimed at determining the activity, expression and regulation of … the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Synthesis Science Head] Yasuo [Yoshikuni] gave back in 2016.” Alper’s first approved JGI proposal came through the … proposals by a consortium. The consortium looked at how different bioenergy relevant plants can produce … the full library.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single largest effort to provide …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… someone on your team will have expertise in this area, or can demonstrate how competencies can be built. We recommend exploring how … file.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … recognize the need to have a limited and time-sensitive protection of certain types of data to support their use by … proposal. Third parties (often referred to as “data users”) cannot see this data. Use-Restriction : A period in which …
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