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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … And then you search for – re-search for these biosynthetic enzymes that we think must be similar within the fosmid … is our interview with Nadine Ziemert, from the University of Tübingen. This continues our short series of genome …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … The work conducted by the U.S. Department of Energy Joint Genome Institute …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access … material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Secondary Metabolites Advisory Committee
… by the Secondary Metabolites Program Head and report back to them. The Committee is chartered to render advice, … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external advisory panel and as advocates of Program …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new genetic mapping strategy called RH-Seq can identify genes that … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … (IT) activities and strategic plan. The IAC serves as the key external advisory panel for the JGI’s Director, CIO, and …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens … shrubby grasses growing by the side of the road become a key player in biomass-based fuels.   …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … are activated to sustain life’s processes.  Traditionally, mapping this intricate network of regulatory “switches” in … to DAP-seq build upon the previous version in several key ways. A research biologist by training, Baumgart and his …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the … Sequence files for all constructs should be emailed to  Miranda … How To Create an Annotated GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest … in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from Oak Ridge National …
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