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JGI Advisory Committee
… the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the …
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Scaling Up Existing Skill Sets
… graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer … During my internship, I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt … outside of the area of focus of most of the rest of the group, which made it feel like I had something tangible to …
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Programs & Platform Leads
… role in providing genome science capabilities to support BER's mission of achieving a predictive understanding … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Tracing the Evolution of Shiitake Mushrooms
… Within those samples, this study also tracks the enzymes these fungi use to break down wood, and compares genetic diversity between … mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s … This research was supported by the NSF awards DEB- 1456588 to D.H. and …
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Team Science Reveals Important Protein in Poplar
… Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein , PtrbHLH011, within poplar … Foundry and the Joint BioEnergy Institute (JBEI.) The JGI team measured the levels of gene expression in the … This work was supported by the U.S. Department of Energy, Office of …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… they need to grow and divide. Similar to the bacterial enzymes that fix nitrogen — nitrogenases — other enzymatic … University and senior author of this work.  North led the team that did this work. His group from the Ohio State University joined Hannah Shafaat’s …
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User Advisory Committees
… The Fungal & Algal Advisory Committee is chartered to offer … Fungal & Algal Program User Advisory Committee …
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Evolution of a Fungal Gene Expression Regulator
… their genomes, but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of Energy …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… processing these sturdy materials, rumen microbes and their enzymes are an optimal study subject that could lead to more … — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal … These genes were identified based on their potential to efficiently degrade lignocellulose in cow rumen, essentially …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for … States. As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at … field data and genetic information has allowed the research team to associate climate adaptations with switchgrass …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential … This is the largest dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and … mitochondrial genome into the nuclear genome over time — supporting the notion that the boundary between these two …
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Mission
… large-scale AI-ready data and professional expertise to support the global research community in studies of complex … plays a central role in advancing this frontier by supporting the scientific foundations that drive … reuse, and transform critical minerals. This knowledge supports developing sustainable materials and complements DOE …
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