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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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The More the Merrier: Making the Case for Plant Pan-genomes
… evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …
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DOE JGI Metagenome Workflow
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Natural Prodcast Episode 13: Francisco Barona Goméz
Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … it falls short, and maybe what we should be saying to be more clear about what we mean. So if you want to learn about … him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … FICUS proposals have helped advance her research. Learn more  here about the “Facilities Integrating Collaborations … We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology …
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Natural Prodcast Episode 20: Brian Bachmann
I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and I’ll be getting together a … a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for …
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Integrating Experimentation with Data
… and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott … government, and industry, are invited. Check back for more details and registration information. Sign up for our …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … on as an exploration into the secondary metabolism of some more novel marine bacteria. You know, I first met Bill as a … this project too. I’m really looking forward to seeing the data when it finally gets off the sequencers. The pandemic …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … Brachypodium distachyon ( 2017 ), have identified many more genes than found in the single reference genome, … on Phytozome … Learn more on the EPICON project … Plant Datasets … Also on Phytozome …
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Mindfully Moving JGI
Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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