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Partnerships: Myco-Ed
… ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ … a scalable solution for production of high-quality fungal reference genomes, this program is an important initiative … Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome …
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Environmental Genomics Group
… We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of … al. 2015). With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined …
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Frequently Asked Questions: Project Management
… Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … the user community. Find out about JGI’s calls for proposals , and submit your proposal online using the Work Initiation Process (WIP) … must be signed and returned before work on your proposal may begin.  You will be notified by your project manager …
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Improving the Cacao Genome and Phytozome
… there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has now been completed and …
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Reference genome sequence of the model plant Setaria
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Frequently Asked Questions: Proposal Submission
… for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of … go to the proposal submission page , login using your JGI account (create one here if you don’t already have an …
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Who We Are
… Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics … communities, and other relevant organisms. We provide access to large-scale datasets and analysis tools for … of scale achieved in doing so enabled the JGI to be the first to publish the sequence analysis of the target …
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JGI Portals
… of DOE mission priorities. Data discoverability and accessibility are critical requirements for amplifying the … for further science.  Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any … GOLD is a web resource for comprehensive access to information regarding genome and metagenome …
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User Support
… move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled to log in. … Process (WIP) interface. To submit a proposal, users must first log in (Note: new users of the JGI will need to … assist with initiation of work through: Coordinating execution of Institutional User Agreements Coordinating with …
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Fungal & Algal Program
… The Fungal & Algal Program harnesses cutting-edge sequencing technologies and advanced genomic … hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm portal. The Fungal & Algal … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …
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Metagenome Program
… analysis of viral genome fragments derived from metagenomic samples … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes and metatranscriptomes. … GOLD is a web resource for comprehensive access to information regarding genome and metagenome …
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‘Candidatus Adiutrix intracellularis’, an endosymbiont of termite gut flagellates, is the first representative of a deep‐branching clade of Deltaproteobacteria and a putative homoacetogen
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