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JGI on the 2020 Highly Cited Researchers List
Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … , and  Jeremy Schmutz were part of a consortium that  released a very high quality reference genome sequence of …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … hard it was – it felt kind of like training for a marathon by running at a high altitude! And a lot of us moved on to … metabolite peptides. And there are two ways that nature does this. The more well-known secondary metabolism systems …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate … or the submission of sequencing data for synthesis – the DOE requires that all work performed in its User Facilities be covered by the User Agreement. … PMO: Frequently Asked Questions … …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … genome sequences 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic … Lead author David Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … just– and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence … Very familiar with working actinomycetes. We can also genetically manipulate them. We can do strain improvements. We …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … leads the Functional Annotation team. MAGs significantly expanded the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of …
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Phytozome: a comparative platform for green plant genomics
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … DAN UDWARY: So Alison, I’m really excited today. We have, by far, I think, one of the most decorated and legendary … for culturing, and then of course using modern phylogenetic tools measuring genes, the 16S gene, and comparing it …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those … the different market classes of beans.” … P. vulgaris on Phytozome … Plant Datasets …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … usage. And I was recently challenged on that on Twitter by Francisco Barona-Gomez. And so he is here to, at least, … evolutionary forces are shaping each part of the metabolic network in each specific organism. Really, what matters is …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a … lab and second author on the paper, studied viral genetics and gene therapy before self-training himself as a … time.” … C. reinhardtii on PhycoCosm … C. zofingiensis on Phytozome … Algal Datasets … Plant Datasets …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory … co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS …
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