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Microbial secondary metabolites: advancements to accelerate discovery towards application
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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Fungal & Algal Program
… functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … understanding of how fungi and algae contribute to ecosystems and industries. The program also explores …
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FICUS-NERSC/KBASE
… performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological …
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Siderophores and secondary metabolites produced by Ganoderma adspersum
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Hiroshi Otani
… Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly … and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 …
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions … on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to drought at the Biosphere 2 …
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Cataloging the Microbes that Manage the Health of River Systems
… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … this may be the first publicly available, river-focused microbial resource that provides information at multiple … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy …
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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Microbiome composition modulates secondary metabolism in a multispecies bacterial community
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Model Fern Reveals Insight into DNA Thievery in Ferns
… fundamental aspects of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii … to protect themselves from environmental stresses, ferns’ secondary metabolites and associated genes are great … the C-fern assembly. While they did identify a couple WGD events, these events could not fully account for the size …
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