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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … larger eukaryotic microbes!” It’s one of my missions in life to get people to think more about fungi.    ALISON: … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – …
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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of Life (NeLLi) Symposium … The JGI is represented at conferences year round; find out where …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … go to the proposal submission page , login using your JGI account (create one here if you don’t already have an …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects …
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Towards a balanced view of the bacterial tree of life
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following … GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.  … individual calls and other opportunities to work with the JGI …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Leveraging single-cell genomics to expand the fungal tree of life
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Diversity of cytosine methylation across the fungal tree of life
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