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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the … Dr. Roux established and currently leads the Viral Genomics group at the JGI to further explore the ecological and …
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Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … by a team led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which …
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The JGI Leadership Team
… This group is responsible for institutional strategic planning, talent management, and convening of advisory committees to guide the direction of programs and initatives to enhance the JGI’s preeminence …
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Leadership
… This group is responsible for institutional strategic planning, talent management, and convening of advisory committees to guide the direction of programs and initiatives to enhance the JGI’s preeminence …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To demonstrate its utility, …
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Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to … from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus mining. After a couple …
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