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User Support
Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and … During this time, your Project Manager will: Coordinate JGI data analysts and other technical experts Track, monitor and …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for … through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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Marine Microbe Contains Multitudes
… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … The metagenomes were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …
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You Can Move, But You Can’t Hide
They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …
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Bioboxes: standardised containers for interchangeable bioinformatics software
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GenomeVISTA—an integrated software package for whole-genome alignment and visualization
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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David Goodstein
… joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein currently leads the Plant … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the …
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Natural Prodcast Episode 22: Alison Narayan
… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … You can really design your experiments in a way that’s data rich, and you can really just learn so much, which then … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …
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