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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary … UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … One of these systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other systems exist. …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global Development” No. …
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The Switchgrass Genome: Tools and Strategies
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects … synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is …
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Elviz – exploration of metagenome assemblies with an interactive visualization tool
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: Q(uestion): Can I apply as a postdoc, or … and guidelines. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …
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