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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the …
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . …
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JGI@25: From Life at the Extremes to Editing Genomes
… Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … Tyson GW et al. Community structure and metabolism through reconstruction of microbial genomes from the environment . …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Webinar: MycoCosm Tutorial
… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … used in the Annotation pipeline are also described in Haridas S, Salamov A, & Grigoriev IV. (2018) Fungal Genome …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership … of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and …
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The Switchgrass Genome: Tools and Strategies
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Elviz – exploration of metagenome assemblies with an interactive visualization tool
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … One of these systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other systems exist. …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … to future environmental conditions. Additionally, insights from the genome could help scale sustainable sugarcane …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …
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