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Work With the JGI! Tips for a Winning CSP Proposal
… Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open … project manager Miranda Harmon-Smith, who helps shepherd CSP projects along. …
Learn more
Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, … from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … to increase fruit and flower size, and confer stress tolerance traits. Given the importance of polyploidy in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single … which genes help plants grow, get nutrients, weather drought, and more. And eventually, their findings could help …
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User Executive Committee Charter
… the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect … duration of UEC membership for individuals serving in these roles. The three Chairs are responsible for preparing the …
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Holo‐omics disentangle drought response and biotic interactions among plant, endophyte and pathogen
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to … Utah. Dr. Schmidt is a natural products chemist who works in a wide variety of marine organisms, including sponges, …
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User Support
… Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an ORCID account with two-factor … project requirements, define the scope of work and outline roles and responsibilities resulting in a formal Statement …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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Natural Prodcast Episode 19: Bill Fenical
… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … local marine environment. I went out and picked up marine plants, I picked up animals. And I asked the simple … powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no …
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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