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Work With the JGI! Tips for a Winning CSP Proposal
… project manager Miranda Harmon-Smith, who helps shepherd CSP projects along. …
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Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
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Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production ▿
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DAP-seq Drives Robust Mapping of Gene Regulation
… of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring … when and where lights turn on or machines start humming, gene regulation determines when and where genes are … — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by …
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JGI Portals
… critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality … host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. …
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Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance
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User Advisory Committees
… The Fungal & Algal Advisory Committee is chartered to offer … Fungal & Algal Program User Advisory Committee …
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New Lineages of Life Group
… complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. … threats in environmental samples. This work combines third generation sequencing and machine learning to enable fast, … A read simulation tool for generating synthetic sequencing data from genomic sequences …
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JGI@25: Using Team Science to Build Communities Around Data
… countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential … Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside … of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these …
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