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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … over 125,000 partial and complete viral genomes. That study multiplied the number of known viral genes by a factor …
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is … — worse, they didn’t even know how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now …
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Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate their …
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A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass
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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk
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Tanja Woyke
… information about a single amplified genome (MISAG) and a metagenome- assembled genome (MIMAG) of bacteria and … 2011. Metagenomic discovery of biomass-degrading genes from cow rumen. Science 331, 463-467. Swan et al. 2011. Potential for …
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