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Examples: Successful LOIs & Submissions
PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated … strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … … cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission …
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … environments without oxygen through a process called methanogenesis. Methanogenic microorganisms therefore play a … is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to …
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Tracking the Origins of Methane-Producing Microbes
… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most …
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Products
Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in … Assembly, annotation ( IMG ), methylation analysis 131/176 Microbial Single Particle Sort Draft quality …
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Environmental Genomics Group
… and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. …
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Domain shuffling and the evolution of vertebrates
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
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Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
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CSP Functional Genomics
… and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and track record of the applicant.  Learn about the general review process or find details on the internal … processing. … Review Process … Sample Requirements … For general questions, please reach out to Christa Pennacchio, …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect … group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — …
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