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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … to functions and fungal species. Initially, mapping RNA sequences this way was challenging, according to Martin. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … segments used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … environment you mentioned, you know that they can have consequences to marine life that surrounds it, whether it be …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the proteins that …
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Promoting the Power of Viral Metagenomics
… early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … they always cluster or could the genes be separated on a genome?  Dan: Oh yeah. It’s biology so anything is possible …
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Genome Project Standards in a New Era of Sequencing
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … the first legume species with a published complete draft genome sequence. At the time, the vital global source of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like …
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