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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … Seshadri, Nikos Kyrpides and Natalia Ivanova conducted a census of publicly available bacterial and archaeal … collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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Ice cover extent drives phytoplankton and bacterial community structure in a large north‐temperate lake: implications for a warming climate
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Data Policy
Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … Research Support Science (BERSS), or Bioenergy Research Centers (BRCs). Overview … Embargo : A period in which data … until publication by PIs or at a set time (most recently, two years after release to JGI portals). JGI will no …
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Development of a thermophilic coculture for corn fiber conversion to ethanol
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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … declared a position on candy corn, which is perfect timing for an October podcast release. I hope that doesn’t get me … lots more to come. Maybe a bonus episode soon, too. Thanks for listening! And enjoy this conversation with Alison …
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Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource that …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … within the JGI Metagenome Program, and coordinates the development of the virus and plasmid workflows for the …
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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … Adaptive …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more …
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