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Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
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Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode
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The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … that. JACKIE: So I guess when you get a new organism or a genome, let's say, and you're looking at clusters, is there …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Annotation Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … A:  When a proposal is submitted to the JGI, JGI scientists will go over the whole proposal for the technical … the full library.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … study first author Avinash Sreedasyam, a HudsonAlpha senior scientist, about the project. The story is reposted here in …
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RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … the JGI unites the expertise at Berkeley Lab,  Lawrence Livermore National Laboratory and the HudsonAlpha Institute …
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Making a Lichen Together
The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … or together, on nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s …
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