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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … will set up a broad experiment to compare results between labs. Their labs, as well as Pett-Ridge’s group, will … are still growing priorities for researchers in this area. “Surprisingly, this was the first workshop of its kind …
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How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … through their close association with the California bay laurel. Because the oaks are considered “dead-end” … could be altered by removing the infectious hosts — the bay laurels. Garbelotto insisted that the intent is not to …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … future single-cell projects.” The Berkeley Lab  Biosciences Area has been leading efforts in developing and applying … officially called out as one of four program development areas for one of the Area divisions. Dickel, and more …
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Depth distributions of nitrite reductase (nirK) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a … and Environmental Research (BER), among others. New areas of emphasis, for those who are already familiar with … is to circulate this document widely within the Biosciences Area and among our Berkeley Lab colleagues, particularly …
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Fungal & Algal Program
… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates … using genomics and multi-omics by working with research labs and culture collections to produce hundreds of diverse …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from Lawrence Livermore and Lawrence Berkeley National Labs. Patrinos shared vivid memories in his presentation of … of this, he noted the new 25th anniversary mural that local Bay Area artist Nigel Sussman recently finished at the …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast … The Microbial Program focuses on using advanced sequencing technologies to explore microbial … The program also studies giant viruses. Key research areas include terrestrial biogeochemical cycling and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with … occupy on a global scale, it’s less than 1% of the coastal area worldwide. But when you then look at carbon storage, … also used a labeling technique known as BONCAT to identify areas involved in protein-making activities, that confirmed …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … and Systems Biology Division of the Lab’s Biosciences Area since 2018. Woyke also holds appointments as Adjunct … had on the field of microbial genomics. Her work in the areas of single-cell microbial genomics and giant virus …
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