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Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … Doing the JGI internship has given me a great experience working intermediately between academia and industry, which … outside of the area of focus of most of the rest of the group, which made it feel like I had something tangible to …

… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A … The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … Summary Filamentous fungi are like handymen who show up at a job site for a task that requires a flathead …

Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative … al . In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with … with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome …

RIViT-seq technology could speed up associating transcription factors with their target … particularly sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … RIViT-seq expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … acid quantification in our Illumina and PacBio sequencing workflows and provide guidance as to how to perform sample … that have not been approved to ship or are not sent in JGI-supplied tubes/plates will be returned to the user. PLEASE …

… with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants … organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root … have been able to study both sides of this interaction up close, using RNA sequencing to understand gene …

… with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants … organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root … have been able to study both sides of this interaction up close, using RNA sequencing to understand gene …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … … For further details, please reach out to the Group Lead …

… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. … influences the soil microbiome and biochemical reaction networks, and also assessing the role of viruses in the soil …