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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Doubling Down on Known Protein Families
… and identified many novel structure predictions,” said lead author on the paper Georgios Pavlopoulos, now a research … we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so far — still does … this endeavor, we have not only ventured into the uncharted territory of understanding the vast landscape of functional …
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The Case for Conservation
… the size of the next largest chromosome. As the study first author Carey put it, these sex chromosomes first evolved … of satisfaction. … This work was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; microMORPH …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… of the Universidad de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore … Functional Genomics program at the JGI and a senior author on the paper. “The assumption that all the genes in a …
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Learning to Look
… isolate and extract viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  … more than 10,000 inovirus-like sequences compared to the 56 previously known inovirus genomes. “These genomes are so … Mart Krupovic of the Institut Pasteur, one of the study co-authors and an expert on inoviruses. “The result of this …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … in the lab,” noted Stephen Nayfach, the study’s first author and research scientist in Nikos Kyrpides’  Microbiome … head of the  JGI Metagenome Program and senior author on the study elaborated on Nayfach’s comments. “This …
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Boosting Small Molecule Production in Super “Soup”
… chemical products,” said Jewett, one of the study’s senior authors. “But this has been done most commonly in … student Blake Rasor. He and Yi, one of the study co-authors, have maintained a regular shipment schedule, with … In this cell-free environment, reported Rasor, first author of the study, the lysate produced BDO at higher …
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The Soil Blooms Green
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Marine Microbe Contains Multitudes
… to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 … pool. Summary To study the lifestyles of SAR324, lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long …
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