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User Support Analysis Group
The User Support Analysis group provides computational analysis … focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of … product types, to the development of automated analysis pipelines for standard sequencing products performed at scale. …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) … for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input and …
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Tour the IGB
… of each floor, click and drag to look around the space, use the graphic rings to move about the space, and your pointing device to zoom in and … to advancing the frontiers of environmental and energy genomics.  For more information about the science depicted, …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the … and anti-pest compounds.  The program is working to expand genomic resources for key plant species, enhancing our … and support ecosystem health. By integrating cutting-edge technologies and data-driven methods, the program equips …
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Minimum Information about an Uncultivated Virus Genome (MIUViG)
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The minimum information about a genome sequence (MIGS) specification
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Data Ecosystem
… environments. … KBase is a critical partner in enabling systems biology analyses, such as metabolic modeling, … annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales … through distributed data infrastructure and linked data technologies. The NMDC seeks to connect and engage the …
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A One-Stop Shop for Analyzing Algal Genomes
… an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … to see their favorite alga’s predicted genes and their organization, and analyze genes in the nucleus and …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical …
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic … and energy genomics. Click on the images below to learn about the science depicted. The two-story JGI mural was … 25th anniversary and done by Berkeley-based artist Nigel Sussman. It was dedicated at the 2022 JGI Annual Meeting. …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
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