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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Accurate, multi-kb reads resolve complex populations and detect rare microorganisms
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … families, and pathways, enhancing our understanding of evolutionary diversification and microbial diversity. Learn …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Illuminating the Virosphere Through Global Metagenomics
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Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … on addressing critical energy and environmental challenges. Through innovative research in synthetic biology, the …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using … and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … DNA modifications (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at the University …
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