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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology … combinatorial libraries.  We have developed and continue to improve automated assembly pipelines bringing in new …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … Lab). Specific understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, … the Joint BioEnergy Institute (JBEI). Cole led the work in collaboration with JBEI as part of the 2021 Laboratory …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s … two prongs and one of those prongs is through a tight-knit collaboration with JGI to do genome sequencing, so to look …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … Lab). Specific understanding of this symbiosis could offer improvements in multiple directions. On the fungi side, … the Joint BioEnergy Institute (JBEI). Cole led the work in collaboration with JBEI as part of the 2021 Laboratory …
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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Improving Microbial Genome Annotations in an Integrated Database Context
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Cyanobacterial-based approaches to improving photosynthesis in plants
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology … download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only …
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
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David Goodstein
With a background in experimental and computational surface … at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the JGI … Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , …
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