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Metagenome‐Assembled Genomes for Oligotrophic Nitrifiers From a Mountainous Gravelbed Floodplain
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Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi
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JGI Accepts 17 Proposals for Community Science Program
… (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent … State University and colleagues are interested in the microbial communities that live on Alaska’s glacially … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … genome sequence of a mycorrhizal fungus shifted the focus from looking at single organisms to applying a broader …
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VEGA Symposium
… Bird rates available now General & Berkeley Lab Attendee – $250 Student – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & … discoveries related to functional characterization of novel viral diversity, molecular mechanisms of virus-host …
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Open Frameworks Training the Next Generation of Scientists
… for sequencing and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect … (Module 1), Experimental Design and Sample Metadata (Module 2), Sample Collection and Processing (Module 3), Data … readily available via the KBase platform. This effort grew from a  modularized training program with the aim for future …
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IMG/VR
… of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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A bacterial pioneer produces cellulase complexes that persist through community succession
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Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens
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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
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Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
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