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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… understanding of how these bacteria evolved could help inform engineering microorganisms for biofuel production and … found there utilize a unique array of chemicals not typically found in oceans or soils.  A recent study published … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has …
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon
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JGI@25: Studying Sorghum’s Survival Skills
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … of sorghum begins. Enabled by the JGI’s Community Science Program, Todd Mockler and his team collect diverse lines of … have also been sequenced, and the EPICON studies are still informing work on sorghum’s drought tolerance.     …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI Hosts GPU Hackathon in May
… high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the life … the JGI hackathon is particularly focused on developing bioinformatics applications instead of on simulation codes. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … of small DNA fragments into larger and coherent pieces called contigs — into genes and even into genomes — from … environment and transfer that ability into industry, specifically to generate biofuels,” Hess said.  (Only 90 of those …
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Honey Bee Gut Microbiota Divvy Up Dinner
… complex polysaccharides. Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next generation of … which have complex, branching chains of polysaccharides called pectin and hemicellulose. While these two … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like it, are uncovering the true … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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The fungus that made itself at home
… a new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have gained … the lignin behind. The brown rot Serpula lacrymans is typically found in spruce and other conifers in boreal forests. … at the Joint Genome Institute, a DOE Office of Science User Facility, compared the genomes of two strains of fungi …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as … Carlos Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan … the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re using an attentive …
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