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Providing biological context for GWAS results using eQTL regulatory and co‐expression networks in Populus
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Gut Fungi: Unexpected Source of Novel Chemicals
… source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds … that these expressed genes translated into expected proteins. That work was done in collaboration with the … analyses) to break up the compounds and to puzzle out their structures. Their results indicate that anaerobic fungi …
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Virus Discoveries that Keep Getting Bigger
… viruses has enabled findings on host range, morphological structures, and infection strategies. More recently, … detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to search for giant … reference genome, to sift for snippets of giant viruses in metagenomes. This has been useful in marine environments, …
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Ian Blaby
… strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. … with a view to developing a deeper understanding of sequence-based gene function. … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … continue to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz … a JGI podcast episode about the work, the effort to fully sequence the fire moss genomes ran the gamut of sequencing …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … GOLD Database …
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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome
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