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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … address some of the most pressing challenges of our time. For more information, please visit  …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – 100ng range. Note that …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … project, does the data produced become public as well? A:  Currently NEON doesn’t have a method for hosting that data. …
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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … next generation of STEM professionals. Students can apply for internships and work onsite with an experienced … Hi. I'm Jehan Jacobs. I'm a rising sophomore at UC Berkeley studying data science. I’m here at the Lab with the SEED …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … first version of the  IMG Plasmid Resource (IMG/PR) , which currently has more than 700,000 plasmids from genomes, … Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. Department of Energy Office of Science and …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have … in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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