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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … to learn more about the program's areas of focus, major initiatives and more.  … leadership and oversight for all of the JGI user programs, including the Community Science Program and Emerging …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership … to learn more about the program's areas of focus, major initiatives and more.  … B.S. in Chemical Engineering, University of California Santa …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … to customize the crop for additional end products. The genetic diversity within this set of plants, each with a … genome, and these gardens allow researchers to test what genes affect the plant’s adaptability to various …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their potential to …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous … Blurring the Line Between Plasmids and Phages … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all types … well as tools for analysis. “There is evidence that methanogenesis is one of the oldest metabolisms, with the first …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living opals” because of the strange, beautiful properties of their silica shells. But what genes are responsible for such mesmerizing exteriors? …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have … contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … about 2% of the human genome. They were interested in genes involved in repair of DNA damage, and those associated …
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