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JGI Workshop at SIMB NP Meeting
… often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of …
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Better Crops With a Pointillist Approach to Plant Genomics
… using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And eventually, their findings could help us grow better crops, with less impact …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… of the Arkansas. However, recently, there’s been a major restoration effort. So I had a PhD student named Brian … And that led me to get even more interested in how general environmental stressors, um, alter microbial biomass … off. And that’s in a single lifetime, right? Or maybe two generations. And so, you know, and the real question is, can …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many … it to any genome of interest.” This figure outlines the general methodology he and Rokhsar came up with: Until they … wasn’t completely accurate. “They took every single gene from octoploid strawberry, compared it to other …
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What Happens Underground Influences Global Nutrient Cycles
… of the JGI’s Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in … as the alga is colloquially known by researchers. A missing gene from this mutant library leads to photosynthetic … conditions. The team aims to functionally link gene families to photosynthesis and discover gene functions …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… peering into the function and activity of phytoplankton genes and looking at how communities of these microalgae … alga Microglena sp. YARC, which also contains expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product Discovery Kayla Kelly … Brian Bushnell Project:  Machine Learning Applications in Gene Annotation Masato Terasaki Mentor: Yumary Vasquez …
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JGI announces 2024 Functional Genomics awardees
… and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … of how early plants transitioned from water to land. Key gene groups involved in stress tolerance and …
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Four Researchers Join JGI User Executive Committee
… to the development of bio-based products and next-generation technologies, and toward a secure energy … Program and the Microbial Program over the past decade in gene regulatory network projects supported by the CSP, and as …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The Impact The initial analysis highlights abundances of gene annotations that provide insights into the nutrients … a statistical tool that helps researchers utilize gene markers across different ecosystems to better … are a way to measure the collection of the microbiome’s genetic makeup. Microbes have specific tetranucleotide …
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