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A Collaboration to Improve Plant Genome Annotations Across Species
… DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … plant species. It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome …
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Len Pennacchio
… at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where … by DOE and through continued competitive grant support from NIH. … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & …
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Learning to Look
… DNA genomes and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to the way we currently isolate and extract viruses,” said the study’s lead author … now overhauls our perception of this virus group – from minor curiosities they become a prominent component of …
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Honey Bee Gut Microbiota Divvy Up Dinner
… bees eat plant nectar and pollen. Nectar is an easily absorbable solution of sugars. But pollen contains plant cell … to an extent.  Gilliamella  primarily degrades pectin. But not all strains of  Gilliamella  are capable of pectin … than  Gilliamella  to breaking down hemicellulose. But not  all strains of  Bifidobacterium  are able to carry out …
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Improving the Cacao Genome and Phytozome
… produces cacao beans – was released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The … by HudsonAlpha scientists, with the help of funding from Mars Wrigley. The annotated genome has been updated to a high quality modern … sciences in the United States, and is working to address some of the most pressing challenges of our time. For more …
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A Complex Confection Decoded: Sugarcane Reference Genome
… R570 has been  published in  Nature by an international consortium. With the genetic code of sugarcane, researchers … to future environmental conditions. Additionally, insights from the genome could help scale sustainable sugarcane … pipeline and techniques. High quality primary assembly not only includes a full representation of the diversity …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … act as a carbon sink. Summary As global temperatures rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in late 2013, when a large patch of warm …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… applying them to environmental and energy challenges. But not all scientists have the expertise and resources to do … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given … experimentally verified in S. coelicolor . With results from the research, RIViT-seq data have increased the …
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Alabama A&M Interns Access An Abundance of Knowledge
… the DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI … plant root exudates on the plant microbiome. They also took part in many enriching workshops and networked with … for me to grow and just learn. And being a JGI intern means not only just watching and observing your mentor, but also …
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Chomping Toward Better Plastic Recycling
… plastic – except, how to break it down for recycling. But some hungry insects can digest plastic. So researchers are taking a look at how these critters …
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