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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and their … of rumen microorganisms . Thanks to the breadth of this study, researchers around the world are continuing to build …
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Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation
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Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on … in more species, as well as modifying this method to study other types of problems surrounding differential …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … and replicating with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, … characterize viral-host interactions. The team discovered that the mat’s viruses specialize to single …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of … workshops. Of common interest is the method development to study active sites or single cells in their functional …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … that happen between tiny organisms (microbes) located in soils and water. MGEs like viruses and plasmids drive … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous … Blurring the Line Between Plasmids and Phages … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes …
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IMG/VR
… of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage … through the more than 2 million viral sequences available in IMG/VR v3. …
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Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility … Along with the existing UEC members, their areas of study span the research interests of the JGI’s user …
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