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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… in science, technology, and diversity/inclusion by the annual  HPCwire Readers’ and Editors’ Choice Awards . … team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project. The award recognized … team. “They produced fantastic scientific results this year by assembling a collection of large datasets that will …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and … has opened vast windows into specific activities catalyzed by microbial communities. By pairing RNA or DNA sequencing … labeling for these experiments.  This group included Elisha Wood-Charlson, User Engagement Lead for the DOE Systems …
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A Model System for Perennial Grasses
… perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that … plant biomass into sustainable fuels for cars and jets. By studying a close relative model species like P. hallii , … food and fuel use. In Nature Communications , a team led by Tom Juenger at the University of Texas (UT) at Austin and …
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Yasuo Yoshikuni
… Shen et al., Mitochondrial ATP generation is more proteome efficient than glycolysis., Nature Chemical Biology … et al. Intersubunit Coupling Enables Fast CO2-Fixation by Reductive Carboxylases., ACS Central Science , 2022 …
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Boosting Small Molecule Production in Super “Soup”
… they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep … August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and … to “Soup” The work started with yeast strains engineered by Alper’s team to convert the sugar glucose to the products …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … which help bacteria resist foreign genetic elements by incorporating short sequences from infecting viruses and … reported in Nature Communications. The work was co-led by Victoria Turzynski in Alexander Probst’s lab at the …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Dr. Ben Cole and Dr. Axel Visel led to being co-advised by Dr. Tanja Woyke and additionally mentored by members of her lab – especially Dr. Robert Bowers who … to help train the next generation workforce. Co-advised by JGI Microbial Program Head Tanja Woyke and UC Merced …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… and environmental remediation—all priorities identified by the DOE Office of Biological and Environmental Research … might contribute to the emergence of new pathogens. “ By sharing our vision broadly across Berkeley Lab, with …
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Boosting Small Molecule Production in Super “Soup”
… format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and … they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from … that are available these days and that are widely used by many, many scientists.”  Using samples of rumen-digested …
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When “The Blob” Made It Hotter Under the Water
… model of how marine microbial communities are affected by warming events. More time-series studies could help … models on how climate change may impact marine microbes and by extension, the ocean’s capacity to act as a carbon sink. … next two years it slowly spread, raising water temperatures by a few degrees. Eventually The Blob reached southern …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… found in iron-oxide microbial mats. The reddish hues caused by the presence of iron led Inskeep and his colleagues to … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy …
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