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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … Engineering Group. “Our team’s ultimate goal is to allow scientists to search for specific types of data across …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … gametes in one individual. But some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … a great impact for growers.”   … Glycine max on Phytozome … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … …
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JGI Scientists Pen Genome Watch Articles
Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … “It’s a great opportunity for JGI to work on these, as it allows us to highlight hot topics in genomics.” And it makes …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in … (1996) … List available on Google Scholar … Education … Publications …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … a strong core foundation of robust mass spectrometry workflows for polar and nonpolar metabolite analysis, creation of … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership … with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … Google Scholar … Education … Awards and Service … Selected Publications …
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Ben Bowen
… bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State University, Bioengineering & … Google Scholar. … Education … Awards and Honors … Selected Publications …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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