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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s accuracy, and increase its …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in … environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added … Additionally, the team also used a similar rewiring strategy to produce the small molecules glycerol and …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … “These proteins’ binding preferences are very, very stable over long evolutionary times. But, there’s a lot of …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Congratulations to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium … techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 Nature paper , …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … support, how much help can users expect for data analysis of the different omics analysis? Are users expected …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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