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Microbial co-habitation and lateral gene transfer: what transposases can tell us
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… species will vary in activity as well; at any given time, many species in a community may be in ‘low power … weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers can … a semi-automated, standardized process to carry out the onerous SIP sample processing. Generating these datasets …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was …
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Data Ecosystem
… and the development of new informatics tools specifically optimized for high-performance computing environments. …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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Digging into Microbial Ecosystems Deep Underground
… the pandemic, they took the JGI on a sampling field trip. One of the questions they’re looking at: the role viral …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… surrounding the root) samples from the plants at the same time each week over the full life cycle of the plant. The … For the study, the team grew two sorghum varieties: one that tolerates better pre-flowering drought stress and a … better after flowering. All plants were subjected to one of three conditions during their lifecycles. In the …
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Accelerating Metagenomics Discoveries with Deep Learning
… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … sequences. Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers … to address some of the most pressing challenges of our time. For more information, please visit  …
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Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan … to address some of the most pressing challenges of our time. For more information, please visit  …
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