Search

… project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … mycorrhizal symbionts shuttle water and nutrients to trees; plant pathogens colonize living plants to feed on them.  …

… that crop varieties grow best in certain regions. Most plant species have adapted to their local environments; for … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … to customize the crop for additional end products. The genetic diversity within this set of plants, each with a …

… of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this … one-million base pairs in desert truffles — more than twice the size of the largest fungal mitochondrial genome …

… in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s … Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar joined the faculty of … the Physics Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research …

… to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well … Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …

… Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC … Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product Discovery Kayla Kelly … Brian Bushnell Project:  Machine Learning Applications in Gene Annotation Masato Terasaki Mentor: Yumary Vasquez …

… estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … Program and co-author of the paper. The JGI is a DOE Office of Science User Facility located at Lawrence Berkeley … technologies. The JGI recognized this opportunity early, developing standardized workflows to produce high-quality, …

… internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer … an exceptional help in my summer project, whether it was developing my coding abilities or guiding me through …

… evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, … JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also …

… Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward … Jensen, R. O. et al. 2024. Phylogenomics and genetic analysis of solvent-producing Clostridium species. … K et al. 2020. IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase. Nucleic …

… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … (BDO). To do so, the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 … rate of 0.9 grams per Liter-hour in a system optimized for developing small-scale prototypes. Additionally, the team …