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MAGI: A Method for Metabolite Annotation and Gene Integration
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JGI Interns at UC Merced Earn CAMP Merit Awards
As part of the ongoing partnership between DOE JGI and UC Merced to … Gutierrez Huerta and Bryan Rangel Alvarez, both California Alliance for Minority Participation (CAMP) students … underrepresented minorities in science, technology, engineering and math (STEM) fields. At the 2016 CAMP …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks …
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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Understanding Wildfire Recovery, Starting in Soil
The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a … which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a …
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Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590T, a Thermophilic Bacterium
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