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… leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the … of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, … putting humans in the loop. He is a big proponent of empowering people and transparency and a staunch supporter of …

… This series is the story of a giant metagenome assembly from Wisconsin’s Lake … a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — …

… “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of … artificial chromosomes (BACs), vectors that can hold large DNA segments such as an entire sugarcane gene and its … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …

… unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm …

… notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake … by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and to better …

… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …

… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … region in the SPEARE proteins appears to be involved in DNA degradation, and these proteins may be directly involved …

… of environments, including plants, soil, and the gut. To better understand the dynamics of this molecule, … 1) complementation of split luciferase (CSL) and, 2) bioluminescence resonance energy transfer (BRET)-based … within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a set of 92 …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … that showcase our collaborations and capabilities to enable great science that will help solve energy and … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and …

… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will … to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … that showcase our collaborations and capabilities to enable great science that will help solve energy and … Schmutz have continued their work together unlocking the powers of the bean. Though the JGI no longer works on food …