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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have … infect microeukaryote hosts. In doing so, they influence ecosystem-level nutrient cycling and carbon storage. For … approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April … living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for … and even how quickly. But there's a catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  recently published in the journal  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities
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Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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Metagenomes from two microbial consortia associated with Santa Barbara seep oil
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