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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… unique array of chemicals not typically found in oceans or soils.  A recent study published in  The ISME Journal     … a complex pattern of evolution for genes related to eating plant compounds in both the oceanic and hot spring  … bacteria lack complete biochemical pathways to break down plant material on their own, they likely cooperate with …
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Three Join the JGI User Executive Committee
… is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the … in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or …
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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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ORT: A workflow linking genome-scale metabolic models with reactive transport codes.
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Aerobic bacteria and archaea tend to have larger and more versatile genomes
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Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
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BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… to crowdsource antimicrobial discovery for the control of plant pathogens, partnering with 600 instructors worldwide … which species of mycorrhizal fungi are important for poplar plant health, in part to learn how these species can … in the presence of other fungi. Poplar is a  JGI Flagship Plant , of interest as a candidate  bioenergy feedstock . …
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iPHoP: A Matchmaker for Phages and their Hosts
… microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon … model to give its integrated prediction a confidence score. The result is a genus-level host prediction tool that … microbiome data. In other environments, such as terrestrial soil, having additional isolates and metagenomic datasets …
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Katherine Louie
… are a result of Dr. Louie’s establishment of a strong core foundation of robust mass spectrometry workflows for … Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific … Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA …
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Informatics Advisory Committee
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