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Subsurface hydrocarbon degradation strategies in low- and high-sulfate coal seam communities identified with activity-based metagenomics
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … of the Microscale Applications group at the JGI, whose team uses a semi-automated, standardized process to carry …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department … hosted three undergraduates and seven graduate students from UC Merced through their long standing internship program. In just two months, the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  … that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … this work sets up protocols and pipelines that other teams can use around the world. These tools give researchers …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … users — have access to high-quality, assembled datasets from all of this information. The JGI aims to create … the combined resources of the JGI, NERSC and ExaBiome teams. Part 1: Many, Many Mers — While biologists were out …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … tool to repress targeted genes in the organism. The team demonstrated that this tool, called CRISPR inhibition … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of … zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  …
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Nigel Mouncey
… 27-year history. He has a wealth of managerial experience from almost 20 years in the Industrial Biotechnology private sector, as well as research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a … During his time in industry, Dr. Mouncey directed R&D teams that focused on the discovery, development and …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor …
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A Model System for Perennial Grasses
… (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … yields for food and fuel use. In Nature Communications , a team led by Tom Juenger at the University of Texas (UT) at …
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