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Streamlining Regulon Identification in Bacteria
… genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. … application of the technology, in principle, RIViT-seq can be applied to any transcription factors or regulatory … alternative sigma factors to initiate transcription of gene sets associated with functions like stress responses and …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans … less than 10% of the microbes found in any environment can be grown in a laboratory — and rumen microbes are no … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate research …
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Waiting to Respire
Communications , two research teams joined forces and data sets to describe bacterial genomes for related (“sibling”) … named for Lynn Margulis, the main proponent of the significance of endosymbiosis in evolution of eukaryotes, and … a renowned science popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then …
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Tracking the Origins of Methane-Producing Microbes
… they found that one of the MAGs contained the complete set of genes needed for hydrogen-dependent and CO2-reducing … to address some of the most pressing challenges of our time. For more information, please visit  …
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The Busy World of Deep Sea Eruptions
But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial …
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Trent Northen
… alignment of tandem mass spectra with statistical significance. SIMILE enables alignment of tandem mass spectra with … bacterial polyphenol metabolism in an anoxic wetland soil. Nat Commun. 2021 Apr 29;12(1):1-6. … Couradeau E et al. Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun. 2019 10(1):2770. …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum … of scientists made an ambitious plan to begin to link the plant’s varying traits — height, biomass, hardiness to cold, …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest …
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Decoding Yellowstone’s Microbial Mats
Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how …
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University of California, Merced Internship Program
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