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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Access to Rock Star Scientists
… the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and … My favorite thing is the mentorship provided by JGI. Everyone at JGI is so nice and helpful.”     Mo Kaze, UC Merced … have done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … said virologist Mart Krupovic of the Institut Pasteur, one of the study co-authors and an expert on inoviruses. …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental biologist and current … Ridge National Laboratory Governor’s Chair, noted that one of the biggest questions was the mystery of the missing …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions … by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … For the study, the team grew two sorghum varieties: one that tolerates better pre-flowering drought stress and a …
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JGI Hosts GPU Hackathon in May
… in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … applications instead of on simulation codes. “JGI is one of the largest producers of environmental genomics data …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows … dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … only for viruses and other microbes , but for scientists. One emerging industry application of DGRs is to use them to …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) … a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … 10.9-42.3 Kb. Additionally, the gene counts have similarly gone up from 13-25 to 12-39. “Overall,” the team concluded, …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … as well as the Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are …
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