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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … for metagenomic sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … more density fractions. It also limits the potential for human error that might compromise samples. In addition, …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … director of UC Merced’s Undergraduate Research Opportunity Center, echoed similar sentiments for the undergraduate …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett … influence carbon cycling in coastal mangroves. His work centers on samples collected on Mud Island – “it’s … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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JGI-UC Merced Interns Share Their 2021 Experiences
… 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research … Transcriptomes of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage … of Genomic Variations … Comparative and Functional Genomic Analysis of Genus Roseovarius … Implementing a Scalable …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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