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JGI User Executive Committee Expands
… and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the … at the Donald Danforth Plant Science Center, where his group focuses on interactions underlying plant adaptation in … Sogin is a microbial ecologist at UC Merced, where her group focuses on the interactions between seagrasses, …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can … as multiple copies across the chromosomes. In a follow-up study , researchers focused on two types of naturally …
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JGI-UC Merced Interns Share Their 2021 Experiences
… interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, … this program’s history, two interns returned to re-engage with their mentors from the previous year and continue … The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career in …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … spans 15 years and involves more than 17 research groups. The team set out to characterize the transcriptome – … experimental conditions, tissue types, and analytical protocols that permit gene expression analysis across plants …
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A Powerful Technique to Study Microbes, Now Easier
… National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in … process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… and University of California (UC), Merced. What started with 2 interns in the summer of 2014 has grown to a total of … that they provide the “funding and administrative/faculty support so that they can deliver these programs to our … position with the Plant and Microbe Interaction group at Oak Ridge National Laboratory, he has started a new …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship … poplar ( Populus trichocarpa ) trees, as well as the soil surrounding their roots (known as the rhizosphere), … revealed key metabolic pathways and metabolites associated with the tree’s stress response. Finally, using …
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